MemoteReportApp

Independent Section

Contains tests that are independent of the class of modeled organism, a model's complexity or types of identifiers that are used to describe its components. Parameterization or initialization of the network is not required. See readme for more details.

Consistency

Stoichiometric Consistency

100.0%

Mass Balance

100.0%

Charge Balance

100.0%

Metabolite Connectivity

100.0%

Unbounded Flux In Default Medium

88.9%

Sub Total

98%

The Sub Total is the result of the following calculation. For more information please click on "Readme" in the top left of the report.

$\frac{99.96 + 88.87 + (3 \cdot 100) +}{(5 \cdot 100)} = 98.40$ $(99.96 + 88.87 + (3 * 100) + )/((5 * 100)) = 98.40$

Annotation - Metabolites

Presence of Metabolite Annotation

100.0%

Metabolite Annotations Per Database

pubchem.compound

0.0%

kegg.compound

71.9%

seed.compound

85.3%

inchikey

0.0%

inchi

0.0%

chebi

76.7%

hmdb

56.5%

reactome

0.0%

metanetx.chemical

96.1%

bigg.metabolite

100.0%

biocyc

79.9%

Metabolite Annotation Conformity Per Database

pubchem.compound

0.0%

kegg.compound

100.0%

seed.compound

100.0%

inchikey

0.0%

inchi

0.0%

chebi

100.0%

hmdb

100.0%

reactome

0.0%

metanetx.chemical

100.0%

bigg.metabolite

100.0%

biocyc

100.0%

Uniform Metabolite Identifier Namespace

100.0%

Sub Total

79%

The Sub Total is the result of the following calculation. For more information please click on "Readme" in the top left of the report.

$\frac{71.92 + 85.35 + 76.66 + 56.47 + 96.11 + 79.86 + (10 \cdot 100) + (8 \cdot 0)}{(24 \cdot 100)} = 78.78$ $(71.92 + 85.35 + 76.66 + 56.47 + 96.11 + 79.86 + (10 * 100) + (8 * 0))/((24 * 100)) = 78.78$

Annotation - Reactions

Presence of Reaction Annotation

100.0%

Reaction Annotations Per Database

rhea

43.4%

kegg.reaction

27.5%

seed.reaction

68.8%

metanetx.reaction

94.4%

bigg.reaction

100.0%

reactome

0.0%

ec-code

40.4%

brenda

0.0%

biocyc

40.2%

Reaction Annotation Conformity Per Database

rhea

98.1%

kegg.reaction

100.0%

seed.reaction

100.0%

metanetx.reaction

100.0%

bigg.reaction

100.0%

reactome

0.0%

ec-code

98.0%

brenda

0.0%

biocyc

100.0%

Uniform Reaction Identifier Namespace

100.0%

Sub Total

81%

The Sub Total is the result of the following calculation. For more information please click on "Readme" in the top left of the report.

$\frac{43.40 + 27.51 + 68.81 + 94.43 + 40.41 + 40.23 + 98.12 + 98.05 + (8 \cdot 100) + (4 \cdot 0)}{(20 \cdot 100)} = 80.86$ $(43.40 + 27.51 + 68.81 + 94.43 + 40.41 + 40.23 + 98.12 + 98.05 + (8 * 100) + (4 * 0))/((20 * 100)) = 80.86$

Annotation - Genes

Presence of Gene Annotation

100.0%

Gene Annotations Per Database

refseq

0.0%

uniprot

99.9%

ecogene

99.9%

kegg.genes

0.0%

ncbigi

99.8%

ncbigene

99.9%

ncbiprotein

0.0%

ccds

0.0%

hprd

0.0%

asap

99.9%

Gene Annotation Conformity Per Database

refseq

0.0%

uniprot

100.0%

ecogene

100.0%

kegg.genes

0.0%

ncbigi

0.2%

ncbigene

100.0%

ncbiprotein

0.0%

ccds

0.0%

hprd

0.0%

asap

100.0%

Sub Total

63%

The Sub Total is the result of the following calculation. For more information please click on "Readme" in the top left of the report.

$\frac{99.93 + 99.93 + 99.80 + 99.93 + 99.93 + 0.20 + (5 \cdot 100) + (10 \cdot 0)}{(21 \cdot 100)} = 63.32$ $(99.93 + 99.93 + 99.80 + 99.93 + 99.93 + 0.20 + (5 * 100) + (10 * 0))/((21 * 100)) = 63.32$

Annotation - SBO Terms

Metabolite General SBO Presence

100.0%

Metabolite SBO:0000247 Presence

100.0%

Reaction General SBO Presence

100.0%

Metabolic Reaction SBO:0000176 Presence

100.0%

Transport Reaction SBO:0000185 Presence

98.8%

Exchange Reaction SBO:0000627 Presence

100.0%

Demand Reaction SBO:0000628 Presence

100.0%

Sink Reactions SBO:0000632 Presence

Skipped

Gene General SBO Presence

100.0%

Gene SBO:0000243 Presence

100.0%

Biomass Reactions SBO:0000629 Presence

100.0%

Sub Total

91%

The Sub Total is the result of the following calculation. For more information please click on "Readme" in the top left of the report.

$\frac{98.80 + (9 \cdot 100) + (1 \cdot 0)}{(11 \cdot 100)} = 90.80$ $(98.80 + (9 * 100) + (1 * 0))/((11 * 100)) = 90.80$

Total Score

91%

The Total Score is the result of the following calculation. For more information please click on "Readme" in the top left of the report.

$\frac{(3 \cdot 98.40) + (1 \cdot 78.78) + (1 \cdot 80.86) + (1 \cdot 63.32) + (2 \cdot 90.80)}{(3 \cdot 100) + (1 \cdot 100) + (1 \cdot 100) + (1 \cdot 100) + (2 \cdot 100)} = 90.60$ $((3 * 98.40) + (1 * 78.78) + (1 * 80.86) + (1 * 63.32) + (2 * 90.80))/((3 * 100) + (1 * 100) + (1 * 100) + (1 * 100) + (2 * 100)) = 90.60$

Total Score

91%

Score per Category

Specific Section

Covers general statistics and specific aspects of a metabolic network that are not universally applicable. See readme for more details.

SBML

SBML Level and Version

Errored

FBC enabled

Errored

Basic Information

Model Identifier

iML1515

Total Metabolites

1,877

Total Reactions

2,712

Total Genes

1,516

Total Compartments

Metabolic Coverage

1.79

Metabolite Information

Unique Metabolites

1,169

Duplicate Metabolites in Identical Compartments

Metabolites without Charge

Metabolites without Formula

Medium Components

Reaction Information

Purely Metabolic Reactions

1,542

Purely Metabolic Reactions with Constraints

Transport Reactions

831

Transport Reactions with Constraints

Thermodynamic Reversibility of Purely Metabolic Reactions

0.41

Reactions With Partially Identical Annotations

0.28

Duplicate Reactions

0.00

Reactions With Identical Genes

0.54

Gene-Protein-Reaction (GPR) Associations

Reactions without GPR

109

Fraction of Transport Reactions without GPR

0.06

Enzyme Complexes

309

Biomass

Biomass Reactions Identified

Biomass Consistency

BIOMASS_Ec_iML1515_WT_75p37M

1.00